I'm having the problem right now and it sucks. It is taking 2 of my 5 tuners out of action to 'acquire data'.
Reset didn't help and can't run checkswitch because PTAT has fired off for the evening. This means I'll miss some recordings tonight too. This needs fixed very quickly as far as I'm concerned. I won't put up with it!
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Did you try rebooting just the Super Joey?